PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10330_f_5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C3H
Protein Properties Length: 487aa    MW: 52360.2 Da    PI: 9.2438
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10330_f_5genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.14.6e-116185327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     + C +++rtG C yG+rC+++H++
  Neem_10330_f_5 61 VPDCVYYMRTGVCGYGNRCRYNHPR 85
                    689********************96 PP

2zf-CCCH44.82.1e-14104130127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++lC+f+++tGtCk+G++CkF+H++
  Neem_10330_f_5 104 PGEPLCQFYMKTGTCKFGASCKFHHPK 130
                     589**********************96 PP

3zf-CCCH36.67.6e-12152177227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG+Ck+G +CkF+H++
  Neem_10330_f_5 152 GEKECSYYLKTGQCKFGITCKFHHPQ 177
                     7899********************97 PP

4zf-CCCH36.11.1e-11308334127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++ C+++++tG Ck+G++C+++H++
  Neem_10330_f_5 308 PGEPDCQYYLKTGDCKFGSSCRYHHPR 334
                     5789*********************96 PP

5zf-CCCH36.67.4e-12355380227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +  +C+f++++G Ck+G++CkF H++
  Neem_10330_f_5 355 GVQPCSFYLQNGRCKFGATCKFDHPM 380
                     6789********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.4465886IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-55885IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-86185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-66286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-46485IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.539103131IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-8103130IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-11105130IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.58E-6107131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.6E-5108130IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-5150177IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821150178IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6152178IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-9152177IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-4156176IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.929307335IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6307334IPR000571Zinc finger, CCCH-type
PfamPF006425.4E-9309334IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6312336IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4313334IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-6353380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.234353381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-6353384IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-9355380IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-5357379IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MELYGRNNTA RNGSQSGHQP KWSPAGQTTG LEGTVYFIVT VESMWQLDLK VPESYPERHG  60
VPDCVYYMRT GVCGYGNRCR YNHPRNRAAV EAAVRATGEY PDRPGEPLCQ FYMKTGTCKF  120
GASCKFHHPK HHPGGSLSHV PMNTYGYPLR PGEKECSYYL KTGQCKFGIT CKFHHPQPAG  180
TSVPASAPQF YPPVQSPSVP MAEQYGGAST NMRVARPPVL ASSYVQGPYG PVMFPPGVVP  240
FSGWSPYSAP VSPVLSPGAQ PAVRPTSLYG VTQLSSSMPA LAGPYPSLPS SAGPSSSGQK  300
EQSFPERPGE PDCQYYLKTG DCKFGSSCRY HHPRDRVLPR ANCVLSPLGL PMRPGVQPCS  360
FYLQNGRCKF GATCKFDHPM GAMRYSPSAS SLIESPVTPY PVGSLLSTMA PASSSSDLRP  420
ELISGSKKDS LLSRIPSSGS TSSSSIGLIF SQTGSVPLSD LQLSGQSSVP LSSSRSTRQG  480
VEVRRSS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444253.10.0hypothetical protein CICLE_v10019968mg
RefseqXP_006479891.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A067HHC80.0A0A067HHC8_CITSI; Uncharacterized protein
TrEMBLV4TAY90.0V4TAY9_9R
STRINGVIT_07s0104g01460.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59122647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein